Package moss
Class MoSS
- All Implemented Interfaces:
ItemListener
,ImageObserver
,MenuContainer
,Serializable
,Runnable
,EventListener
,Accessible
,ChangeListener
,RootPaneContainer
,WindowConstants
Graphical user interface for the molecular substructure miner.
- Since:
- 2006.07.13
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from class javax.swing.JFrame
JFrame.AccessibleJFrame
Nested classes/interfaces inherited from class java.awt.Frame
Frame.AccessibleAWTFrame
Nested classes/interfaces inherited from class java.awt.Window
Window.AccessibleAWTWindow, Window.Type
Nested classes/interfaces inherited from class java.awt.Container
Container.AccessibleAWTContainer
Nested classes/interfaces inherited from class java.awt.Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
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Field Summary
FieldsFields inherited from class javax.swing.JFrame
accessibleContext, rootPane, rootPaneCheckingEnabled
Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR
Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
execute()
Execute the substructure search, that is, start a miner.protected JFileChooser
Get the file chooser (create if necessary).protected void
getFileName
(String title, JTextField text) Get a file name and store it in a text field.void
Handle the state change of the support type combo box.static void
Main function to invoke the user interface as a stand-alone program.void
run()
Create the user interface dialog box.void
setGraphsFile
(File file) Set the graphs/molecules file.void
setIdsFile
(File file) Set the identifier output file.void
setSubsFile
(File file) Set the substructure output file.void
Handle the state change of the ring marking check box.Methods inherited from class javax.swing.JFrame
addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated
Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront
Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setMixingCutoutShape, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.awt.MenuContainer
getFont, postEvent
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Field Details
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VERSION
the version string- See Also:
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Constructor Details
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MoSS
public MoSS()Create a user interface dialog box.- Since:
- 2006.07.13 (Christian Borgelt)
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MoSS
Create a user interface for the molecular substructure miner.- Parameters:
owner
- the owner of the window to create- Since:
- 2006.07.13 (Christian Borgelt)
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MoSS
Create a user interface for the molecular substructure miner.- Parameters:
owner
- the owner of the window to createisProg
- whether started as a stand-alone program- Since:
- 2006.07.13 (Christian Borgelt)
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Method Details
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run
public void run()Create the user interface dialog box.Following the recommendations in the Java tutorial, the user interface is created in the "run" method, which is invoked from the event queue, in order to avoid problems with threads.
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stateChanged
Handle the state change of the ring marking check box.- Specified by:
stateChanged
in interfaceChangeListener
- Parameters:
e
- the change event to react to- Since:
- 2006.07.13 (Christian Borgelt)
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itemStateChanged
Handle the state change of the support type combo box.- Specified by:
itemStateChanged
in interfaceItemListener
- Parameters:
e
- the change event to react to- Since:
- 2007.07.06 (Christian Borgelt)
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getFileChooser
Get the file chooser (create if necessary).- Returns:
- the file chooser
- Since:
- 2006.07.15 (Christian Borgelt)
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getFileName
Get a file name and store it in a text field.- Parameters:
title
- the title of the file choosertext
- the text field in which to store the file name- Since:
- 2007.02.15 (Christian Borgelt)
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setGraphsFile
Set the graphs/molecules file.- Parameters:
file
- the graphs/molecules file to set- Since:
- 2014.09.25 (Christian Borgelt)
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setSubsFile
Set the substructure output file.- Parameters:
file
- the substructure output file to set- Since:
- 2014.09.25 (Christian Borgelt)
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setIdsFile
Set the identifier output file.- Parameters:
file
- the identifier output file to set- Since:
- 2014.09.25 (Christian Borgelt)
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execute
public void execute()Execute the substructure search, that is, start a miner.- Since:
- 2006.07.13 (Christian Borgelt)
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main
Main function to invoke the user interface as a stand-alone program.- Parameters:
args
- the command line arguments- Since:
- 2006.07.13 (Christian Borgelt)
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